#include "mainwindow.h"
#include "ui_mainwindow.h"

MainWindow::MainWindow(QWidget *parent) :
    QMainWindow(parent),
    ui(new Ui::MainWindow)
{
    ui->setupUi(this);

    //QString pathToGff =  "../../../Data/Contigs/Contigs-moreData/1201_seq_sorted.gff2";//1201_seq.gff2";
   // QString pathToCluster2 = "../../../Data/Contigs/cdHitData/cd-hit.1201_list.fullNames.c_0.90.clstr";

    readGffAndFasta( "gff", "fasta");
}

MainWindow::~MainWindow()
{
    delete ui;
}

bool MainWindow::readGffAndFasta( QString gffFile, QString fastaFile)
{

    return true;
}

bool MainWindow::fromFastaToCluster( QString fasta, QString& cluster )
{
    return true;
}

bool MainWindow::fromClusterAndGffToTab( QString gffFile, QString clusterFile, QString& tabDelimFile )
{
    return true;
}
